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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64926707_64927317_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
64926707 - 64927317
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
GCCAATTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAGTTTTCATTC
Flanking Amino Acid:
IKDLETKPYENLFVRAVRAY
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
100
1.24
0.5
100
0
Major PPT
73
0.52
1
68.5
41.7
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
46.7
-0.2
1.7
54.71
38.1

Associated Gene:

Gene:
CRTAP
Ensembl Gene ID:
ENSAPLG00000001236
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047718
64922936 - 64943919
20984
ENSAPLT00000001322
64922936 - 64943919
20984