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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64954914_64964962_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64954914 - 64964962
Intron Length:
10049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTAACTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TATTTTTTAACT
Flanking Amino Acid:
WYGQVQACVKDETEAHIDYE
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.5
0.62
0.9
70
41.1
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
83.8
1.14
0.9
92.59
29.1

Associated Gene:

Gene:
SUSD5
Ensembl Gene ID:
ENSAPLG00000001335
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001331
64953652 - 65001012
47361