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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64965152_64973184_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64965152 - 64973184
Intron Length:
8033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCACT
5'SS Class:
major
3'SS Sequence:
TTTATCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTTCTTTTATCC
Flanking Amino Acid:
QYDAFCVKDEDKPCGDPPSF
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.3
75.3
40.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.1
0.86
0.7
85.5
29
Minor 5ss
37.4
-1.4
2.8
50.5
45.5
Minor BPS
56.9
0.19
1.6
66.74
39.4

Associated Gene:

Gene:
SUSD5
Ensembl Gene ID:
ENSAPLG00000001335
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001331
64953652 - 65001012
47361