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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64997137_64999271_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
64997137 - 64999271
Intron Length:
2135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAGGTGTA
5'SS Class:
major
3'SS Sequence:
TAACTGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCTCATTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.1
66.5
39.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
74.2
0.54
1
69.9
40.9
Minor 5ss
37.1
-1.5
3.6
53.6
44.8
Minor BPS
72.9
0.8
1.6
84.99
41.5

Associated Gene:

Gene:
SUSD5
Ensembl Gene ID:
ENSAPLG00000001335
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001331
64953652 - 65001012
47361