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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_64999334_65000923_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
64999334 - 65000923
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTTCTCTCACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
72.7
0.56
1
75
30.1
Major PPT
87.3
0.84
0.7
80
32
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
54.4
0.22
1.8
77.15
39.7

Associated Gene:

Gene:
SUSD5
Ensembl Gene ID:
ENSAPLG00000001335
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001331
64953652 - 65001012
47361