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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65024200_65037333_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65024200 - 65037333
Intron Length:
13134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTCTTTTTAAAT
Flanking Amino Acid:
RGLAAAAAAMVFSNNDEGLI
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
64.1
41.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.5
0.78
0.8
76.2
37.8
Minor 5ss
29.2
-2.4
2.7
30.6
36.2
Minor BPS
66.8
0.61
1.4
77.19
39.4

Associated Gene:

Gene:
FBXL2
Ensembl Gene ID:
ENSAPLG00000001346
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001459
65023000 - 65075696
52697