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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65047842_65049334_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65047842 - 65049334
Intron Length:
1493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
AATCTCTTATTT
Flanking Amino Acid:
TLCRCAQVSKAWNVLALDGS
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
79
0.72
1
78.4
31.2
Major PPT
89
0.88
0.7
85
29.8
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
58.7
0.35
1.6
72.76
38.1

Associated Gene:

Gene:
FBXL2
Ensembl Gene ID:
ENSAPLG00000001346
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001459
65023000 - 65075696
52697
ENSAPLT00000025043
65037313 - 65077528
40216