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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65056013_65056098_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65056013 - 65056098
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
GTATTTTTAGTG
Flanking Amino Acid:
NLNGCTKITDSTCYSLSRFC
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
82
0.72
0.9
76.2
37.8
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
52.3
-0
1.6
56.22
39.8

Associated Gene:

Gene:
FBXL2
Ensembl Gene ID:
ENSAPLG00000001346
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001459
65023000 - 65075696
52697
ENSAPLT00000025043
65037313 - 65077528
40216