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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65061604_65068228_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65061604 - 65068228
Intron Length:
6625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
AAAACTTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTCTTTAATA
Flanking Amino Acid:
TALGLNCPRLKILEAARCSH
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
71.1
0.47
1
66.4
43.9
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
88
1.19
0.8
91.01
22.8

Associated Gene:

Gene:
FBXL2
Ensembl Gene ID:
ENSAPLG00000001346
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025043
65037313 - 65077528
40216
ENSAPLT00000001459
65023000 - 65075696
52697