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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65070487_65074571_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65070487 - 65074571
Intron Length:
4085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTGATGTTAACT
Flanking Amino Acid:
SIHCPKLQALSLSHCELITD
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
78
0.63
0.8
76.4
32.2
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
53.6
0.19
2.1
72.9
43.9

Associated Gene:

Gene:
FBXL2
Ensembl Gene ID:
ENSAPLG00000001346
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025043
65037313 - 65077528
40216
ENSAPLT00000001459
65023000 - 65075696
52697