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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65081836_65082380_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65081836 - 65082380
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TGATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTCTGCATAATA
Flanking Amino Acid:
TGIHILVSDQMVQNFQDESC
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
86.5
0.82
0.8
84.8
35.6
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
55.9
0.18
2
71.88
40.7

Associated Gene:

Gene:
UBP1
Ensembl Gene ID:
ENSAPLG00000001472
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019938
65081758 - 65115759
34002
ENSAPLT00000001889
65081758 - 65115759
34002