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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65085106_65085329_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65085106 - 65085329
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TGTTTCTTACAG
Flanking Amino Acid:
GDGTSQGCGDQLHPSATIQE
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
83.4
28
Major BPS
78.3
0.7
1
80
32.1
Major PPT
89.2
0.88
0.7
84.2
30.9
Minor 5ss
35.6
-1.6
3.5
53.7
43.8
Minor BPS
57.3
0.09
1.8
64.96
42.7

Associated Gene:

Gene:
UBP1
Ensembl Gene ID:
ENSAPLG00000001472
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019938
65081758 - 65115759
34002
ENSAPLT00000001889
65081758 - 65115759
34002