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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65086236_65093201_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65086236 - 65093201
Intron Length:
6966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGGGAC
5'SS Class:
major
3'SS Sequence:
CTCTTACCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTCTCTTACCT
Flanking Amino Acid:
YGDSLAKRGSCSPWPDTPTT
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
60.4
38.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
80.9
0.7
0.8
77.8
29.8
Minor 5ss
31.5
-2.1
3.6
41.5
45.4
Minor BPS
71.9
0.77
1.6
88.99
35.6

Associated Gene:

Gene:
UBP1
Ensembl Gene ID:
ENSAPLG00000001472
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001889
65081758 - 65115759
34002