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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65099448_65105980_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65099448 - 65105980
Intron Length:
6533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTATG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTCTTTATA
Flanking Amino Acid:
YDETLTYLNQGQSYEIRMLD
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
73.9
42.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
91.9
0.94
0.6
88.3
21.5
Minor 5ss
34.3
-1.8
2.9
42.3
44.5
Minor BPS
72.4
0.7
1.5
82.54
31.8

Associated Gene:

Gene:
UBP1
Ensembl Gene ID:
ENSAPLG00000001472
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001889
65081758 - 65115759
34002
ENSAPLT00000019938
65081758 - 65115759
34002