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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65106133_65115646_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65106133 - 65115646
Intron Length:
9514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGCAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TCTCACAGAGTT
Flanking Amino Acid:
QELGAGAYSMSDVLALPIFK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66
41.4
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
29
-2.4
3.4
38
46.9
Minor BPS
41.6
-0.5
2
60.69
42.6

Associated Gene:

Gene:
UBP1
Ensembl Gene ID:
ENSAPLG00000001472
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001889
65081758 - 65115759
34002
ENSAPLT00000019938
65081758 - 65115759
34002