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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65141109_65141862_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65141109 - 65141862
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATGAT
U12 Branch Point Sequence:
GTATCTTGTATA
Flanking Amino Acid:
RDSKKEEVDSICSASGIVDL
Intron Amino Acid Position:
1088

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
73.4
32.4
Major BPS
66.9
0.42
1.3
59.7
46.7
Major PPT
92.2
0.95
0.6
88.3
21.3
Minor 5ss
31.8
-2.1
2.7
38.8
40.3
Minor BPS
49.2
-0
1.7
61.67
38.7

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019920
65131460 - 65253816
122357
ENSAPLT00000044039
65131460 - 65253816
122357
ENSAPLT00000002596
65131460 - 65253728
122269
ENSAPLT00000040289
65131460 - 65238563
107104
ENSAPLT00000034096
65131460 - 65253728
122269
ENSAPLT00000028332
65131460 - 65253816
122357