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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65142017_65142694_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65142017 - 65142694
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTG
5'SS Class:
strong_major
3'SS Sequence:
CCATGGCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TCCATCTTACTC
Flanking Amino Acid:
TNTSQNTLSPSAFDYDTENM
Intron Amino Acid Position:
1036

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
72.3
39.7
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
61.6
0.26
0.9
53
36.6
Minor 5ss
40.4
-1.1
3.3
55.5
48.6
Minor BPS
50.4
-0
1.7
57.66
42.1

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034096
65131460 - 65253728
122269
ENSAPLT00000028332
65131460 - 65253816
122357
ENSAPLT00000019920
65131460 - 65253816
122357
ENSAPLT00000044039
65131460 - 65253816
122357
ENSAPLT00000002596
65131460 - 65253728
122269
ENSAPLT00000040289
65131460 - 65238563
107104