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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65154258_65160203_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65154258 - 65160203
Intron Length:
5946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTACCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCCTAC
U12 Branch Point Sequence:
TCTTCTTCTACC
Flanking Amino Acid:
TRMFADPHSKVFSMFLETLV
Intron Amino Acid Position:
824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
50.1
0
1.2
50.2
36.4
Major PPT
79.2
0.66
0.8
73.9
30.8
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
57
0.2
1.9
70.67
41

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028332
65131460 - 65253816
122357
ENSAPLT00000019920
65131460 - 65253816
122357
ENSAPLT00000044039
65131460 - 65253816
122357
ENSAPLT00000002596
65131460 - 65253728
122269
ENSAPLT00000040289
65131460 - 65238563
107104
ENSAPLT00000034096
65131460 - 65253728
122269