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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65164318_65165028_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65164318 - 65165028
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGAT
5'SS Class:
major
3'SS Sequence:
GTTGTTATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GTTGTTATAACA
Flanking Amino Acid:
LYTPDVYGATGTSFGISQSS
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
71.5
33.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
72
0.5
1
66.8
42.8
Minor 5ss
24.8
-2.9
3.5
36.8
47.7
Minor BPS
55.1
0.16
1.7
68.26
38.3

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002596
65131460 - 65253728
122269
ENSAPLT00000040289
65131460 - 65238563
107104
ENSAPLT00000034096
65131460 - 65253728
122269
ENSAPLT00000019920
65131460 - 65253816
122357