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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65169241_65170153_R

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
65169241 - 65170153
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TGAATCATACTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GAATCAT
U12 Branch Point Sequence:
GTACCCTGAATC
Flanking Amino Acid:
REASPSRLSVARGSRIPRPS
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
62.7
0.32
1.3
66
40.9
Major PPT
57.5
0.17
1
49.5
43.5
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
61.7
0.35
1.4
67.1
37.8

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040289
65131460 - 65238563
107104
ENSAPLT00000034096
65131460 - 65253728
122269
ENSAPLT00000019920
65131460 - 65253816
122357
ENSAPLT00000002596
65131460 - 65253728
122269
ENSAPLT00000044039
65131460 - 65253816
122357