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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65170325_65176021_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65170325 - 65176021
Intron Length:
5697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTACCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTTACTTACAT
Flanking Amino Acid:
QRSSSPEKNEAGSRSGSPGR
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.7
0.73
0.8
79.3
33.7
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
58.1
0.33
1.9
79.4
42

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044039
65131460 - 65253816
122357