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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65170325_65176194_R

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
65170325 - 65176194
Intron Length:
5870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTATGTATT
5'SS Class:
weak_major
3'SS Sequence:
ATTTTACCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTTACTTACAT
Flanking Amino Acid:
SRTKVVSQSQPGSRSGSPGR
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.3
74.4
41.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.7
0.73
0.8
79.3
33.7
Minor 5ss
48.7
-0.1
2.5
64
40.7
Minor BPS
58.1
0.33
1.9
79.4
42

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028332
65131460 - 65253816
122357
ENSAPLT00000019920
65131460 - 65253816
122357
ENSAPLT00000002596
65131460 - 65253728
122269
ENSAPLT00000040289
65131460 - 65238563
107104
ENSAPLT00000034096
65131460 - 65253728
122269