About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65176049_65176194_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
65176049 - 65176194
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTATGTATT
5'SS Class:
weak_major
3'SS Sequence:
TTCTATGCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
ACATACTGAGTT
Flanking Amino Acid:
SRTKVVSQSQRSSSPEKNEA
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.3
74.4
41.9
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
71.3
0.48
0.9
69.7
36.4
Minor 5ss
48.7
-0.1
2.5
64
40.7
Minor BPS
46.6
-0.1
1.8
61.44
42.2

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044039
65131460 - 65253816
122357