Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65181170_65186117_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

65181170 - 65186117

Intron Length:

4948

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCAACAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

ACTTTTTCAACA

Flanking Amino Acid:

GLPPGSYASLEDTSDKMDGT

Intron Amino Acid Position:

523

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.8

76.5

26.8

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

67.2

0.39

1.1

68.9

35.2

Minor 5ss

24.3

-3

3.1

28.7

43.6

Minor BPS

62.1

0.38

1.5

69.17

37.5

Associated Gene:

Gene:

CLASP2

Ensembl Gene ID:

ENSAPLG00000001903

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034096

65131460 - 65253728

122269

ENSAPLT00000002596

65131460 - 65253728

122269