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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65194523_65196795_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65194523 - 65196795
Intron Length:
2273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTGTCATTAACT
Flanking Amino Acid:
GCAAIRFIIRHTHVPRLIPL
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
85.2
32.2
Major BPS
84.6
0.86
1
74
41.2
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
38.2
-1.3
3.4
49.9
46.4
Minor BPS
79.9
1.02
1.5
93.44
34.5

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002596
65131460 - 65253728
122269
ENSAPLT00000040289
65131460 - 65238563
107104
ENSAPLT00000034096
65131460 - 65253728
122269
ENSAPLT00000028332
65131460 - 65253816
122357
ENSAPLT00000019920
65131460 - 65253816
122357
ENSAPLT00000044039
65131460 - 65253816
122357