Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65196932_65198809_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

65196932 - 65198809

Intron Length:

1878

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTAAGTATA

5'SS Class:

major

3'SS Sequence:

CTTTCCTACATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATTAACT

Flanking Amino Acid:

QVVREACITVAHLSTVLGNK

Intron Amino Acid Position:

276

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.3

38.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

73.4

0.53

0.8

69.2

30.3

Minor 5ss

40.3

-1.1

2.8

46.9

41.8

Minor BPS

80.9

1.05

1.4

96.98

27.1

Associated Gene:

Gene:

CLASP2

Ensembl Gene ID:

ENSAPLG00000001903

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028332

65131460 - 65253816

122357

ENSAPLT00000019920

65131460 - 65253816

122357

ENSAPLT00000044039

65131460 - 65253816

122357

ENSAPLT00000002596

65131460 - 65253728

122269

ENSAPLT00000040289

65131460 - 65238563

107104

ENSAPLT00000034096

65131460 - 65253728

122269