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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65205741_65224035_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65205741 - 65224035
Intron Length:
18295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
TATGTTTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TACTGTTTAACA
Flanking Amino Acid:
PGSAGGPKVGGSSKEGGAGA
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.7
0.56
0.9
70.6
39.9
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
64.3
0.45
1.8
71.96
40.5

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034096
65131460 - 65253728
122269
ENSAPLT00000028332
65131460 - 65253816
122357
ENSAPLT00000019920
65131460 - 65253816
122357
ENSAPLT00000044039
65131460 - 65253816
122357
ENSAPLT00000002596
65131460 - 65253728
122269
ENSAPLT00000040289
65131460 - 65238563
107104