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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65224183_65238544_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65224183 - 65238544
Intron Length:
14362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TATCCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTCTTATTT
Flanking Amino Acid:
MMAVGDDKSFDDDESV
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.8
32
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.1
0.79
0.8
76.9
36.8
Minor 5ss
31.1
-2.2
2.7
37.5
40.1
Minor BPS
70
0.7
1.5
84.24
36.8

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040289
65131460 - 65238563
107104