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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65224183_65241883_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65224183 - 65241883
Intron Length:
17701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TATCCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTCTTATTT
Flanking Amino Acid:
SGTMILSSISDKSFDDDESV
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.1
0.79
0.8
76.9
36.8
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
70
0.7
1.5
84.24
36.8

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002596
65131460 - 65253728
122269
ENSAPLT00000044039
65131460 - 65253816
122357
ENSAPLT00000034096
65131460 - 65253728
122269
ENSAPLT00000028332
65131460 - 65253816
122357
ENSAPLT00000019920
65131460 - 65253816
122357