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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65241955_65248153_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65241955 - 65248153
Intron Length:
6199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTCTTCTTTACA
Flanking Amino Acid:
DLTKRGIPPGRLQTIFTKFD
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.1
30.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
92
0.94
0.6
87.3
23.2
Minor 5ss
34.1
-1.8
2.8
39.6
46.4
Minor BPS
70.2
0.63
1.6
78.71
37.7

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028332
65131460 - 65253816
122357
ENSAPLT00000019920
65131460 - 65253816
122357
ENSAPLT00000002596
65131460 - 65253728
122269
ENSAPLT00000044039
65131460 - 65253816
122357
ENSAPLT00000034096
65131460 - 65253728
122269