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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65249482_65249799_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65249482 - 65249799
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAGAAT
U12 Branch Point Sequence:
AGAAAAAGAATT
Flanking Amino Acid:
VCLCLIATLNIYGAQSLSLS
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
80.8
34.4
Major BPS
48.5
-0
1.4
56.1
37.3
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
57.8
0.26
2.7
78.1
36.5
Minor BPS
37.3
-0.8
1.8
49.99
35.9

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028332
65131460 - 65253816
122357
ENSAPLT00000019920
65131460 - 65253816
122357
ENSAPLT00000002596
65131460 - 65253728
122269
ENSAPLT00000044039
65131460 - 65253816
122357
ENSAPLT00000034096
65131460 - 65253728
122269