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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65249892_65253624_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
65249892 - 65253624
Intron Length:
3733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTCTGTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TTCTGTTTTATA
Flanking Amino Acid:
MDEAATPMYIWERLAVGF
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
73.2
38.4
Major BPS
67.7
0.44
1
58
38.9
Major PPT
84.3
0.77
0.7
79.8
32.4
Minor 5ss
71
0.71
2.2
78.5
38.4
Minor BPS
49.8
-0
2
66.19
40.9

Associated Gene:

Gene:
CLASP2
Ensembl Gene ID:
ENSAPLG00000001903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028332
65131460 - 65253816
122357
ENSAPLT00000019920
65131460 - 65253816
122357
ENSAPLT00000002596
65131460 - 65253728
122269
ENSAPLT00000044039
65131460 - 65253816
122357
ENSAPLT00000034096
65131460 - 65253728
122269