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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6528528_6593357_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6528528 - 6593357
Intron Length:
64830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TCTCTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
ATTAATATAAGA
Flanking Amino Acid:
KKLMLRVHIPDLSSFAMPFL
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.3
65.5
42
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
76.4
0.59
0.9
73
31.8
Minor 5ss
35.8
-1.6
3.2
49.6
39.8
Minor BPS
45.4
-0.3
2
60.52
39.1

Associated Gene:

Gene:
PRKAG2
Ensembl Gene ID:
ENSAPLG00000004562
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004758
6386590 - 6594189
207600