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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65294903_65295222_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65294903 - 65295222
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACG|GCACGGCAC
5'SS Class:
major
3'SS Sequence:
TATGTTTATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTATGTTTATTC
Flanking Amino Acid:
DACLDTLLRYALGSTGDSPS
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.3
58
43.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.9
0.67
0.9
77.9
40.2
Minor 5ss
20.1
-3.4
4
32.7
42.4
Minor BPS
48.2
-0.1
2
59.41
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017452
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031806
65294692 - 65295269
578