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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65300648_65305912_F

Intron Information:

Intron Rank:
133684
Intron Class:
major
Intron Phase:
Intron Coordinates:
65300648 - 65305912
Intron Length:
5265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TATTTGCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTACTTAGAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.2
0.54
0.9
66.4
40.4
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
58.8
0.36
1.9
79.73
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021904
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047029
65299993 - 65306612
6620