About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65330559_65358784_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65330559 - 65358784
Intron Length:
28226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTCTTTCAATT
Flanking Amino Acid:
TDVDIVFSKIKGKSSRTITF
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
29.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
75.9
0.58
1
72.2
42.7
Minor 5ss
43.2
-0.7
2.7
54.4
36.6
Minor BPS
63.9
0.51
1.5
81.05
34.8

Associated Gene:

Gene:
TPPP
Ensembl Gene ID:
ENSAPLG00000009901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010310
65318790 - 65359099
40310