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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65405840_65408871_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65405840 - 65408871
Intron Length:
3032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTCTACAACT
Flanking Amino Acid:
KSKKQNKEVISCIFEPEGNA
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.3
34.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.5
0.82
0.6
85.7
21.5
Minor 5ss
34.5
-1.8
3.9
55
49.2
Minor BPS
62
0.45
1.8
83.92
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010017
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010450
65401616 - 65412226
10611