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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65409921_65411066_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65409921 - 65411066
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGCATTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GAAATTTTAACA
Flanking Amino Acid:
NEYKSVTEFKADFKLMCDNA
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
68.2
39.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.1
0.66
0.9
72.7
37.3
Minor 5ss
33.5
-1.9
2.9
40.6
45.6
Minor BPS
60.8
0.34
1.3
62.75
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010017
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010450
65401616 - 65412226
10611