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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65411212_65412143_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65411212 - 65412143
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTAAGT
5'SS Class:
major
3'SS Sequence:
TTTTCCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAAAA
U12 Branch Point Sequence:
TTGTTTTTCCCT
Flanking Amino Acid:
LLEHFLRQLQRKDPHGFFAF
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
68.5
42.3
Major BPS
55.5
0.14
1
61.5
32.5
Major PPT
87.2
0.84
0.6
85.9
21.1
Minor 5ss
34.2
-1.8
3.2
50.1
45.7
Minor BPS
42.6
-0.4
3.5
74.34
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010017
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010450
65401616 - 65412226
10611