About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65414098_65415823_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65414098 - 65415823
Intron Length:
1726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
CTTTCTGTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTCTAT
U12 Branch Point Sequence:
TCTTTCTGTACT
Flanking Amino Acid:
LDDEERRKRKEEKKRKREKE
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.7
43.7
Major BPS
65
0.37
1.3
64.5
42.5
Major PPT
72.2
0.5
0.9
66.5
39.4
Minor 5ss
44.2
-0.6
3.2
64.5
46.9
Minor BPS
60.8
0.42
1.8
80.3
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018632
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041128
65413924 - 65417052
3129