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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65417769_65419521_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
65417769 - 65419521
Intron Length:
1753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTCTGTT
5'SS Class:
weak_major
3'SS Sequence:
TCTTTCTTATTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTTCTTATTA
Flanking Amino Acid:
IHVEVHQNSISTAKKEDIRM
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.4
68.8
42.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
81.1
0.7
0.8
82.2
28.1
Minor 5ss
45.7
-0.5
3.1
67.4
43.7
Minor BPS
66.9
0.53
1.5
74.26
38.3

Associated Gene:

Gene:
TRIP13
Ensembl Gene ID:
ENSAPLG00000010065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010503
65417371 - 65432801
15431