About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65420607_65422475_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65420607 - 65422475
Intron Length:
1869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCACC
5'SS Class:
major
3'SS Sequence:
ATTGCTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTGAT
U12 Branch Point Sequence:
TTTACCTTAAAC
Flanking Amino Acid:
IAANHWVLPAAEFHGLWESL
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.3
60.8
44.2
Major BPS
70.8
0.52
1.2
63.4
44.3
Major PPT
75.6
0.58
0.9
69.2
36.4
Minor 5ss
45.1
-0.5
2.9
62
42.4
Minor BPS
78.7
0.88
1.3
84.99
32.8

Associated Gene:

Gene:
TRIP13
Ensembl Gene ID:
ENSAPLG00000010065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010503
65417371 - 65432801
15431