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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65422532_65425230_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65422532 - 65425230
Intron Length:
2699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GGTCTTCAATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TGGTCTTCAATT
Flanking Amino Acid:
LIYDTEVKSHLLDYVTTTLL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
61.2
0.25
1
60.3
40.6
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
64.5
0.53
1.5
76.75
40.3

Associated Gene:

Gene:
TRIP13
Ensembl Gene ID:
ENSAPLG00000010065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010503
65417371 - 65432801
15431