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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65427198_65428047_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65427198 - 65428047
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATCTTT
5'SS Class:
major
3'SS Sequence:
CTTCCTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GCCTTCCTAATT
Flanking Amino Acid:
AQKLTIRLSYRYKYGQLIEI
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
76.8
34.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
72.5
0.51
0.9
70.9
33.5
Minor 5ss
44.4
-0.6
3.1
64.6
46.7
Minor BPS
55.5
0.25
1.7
68.49
42.9

Associated Gene:

Gene:
TRIP13
Ensembl Gene ID:
ENSAPLG00000010065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010503
65417371 - 65432801
15431