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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65428112_65428383_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65428112 - 65428383
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
GGTCTCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
ATTAGTTAAACA
Flanking Amino Acid:
HSLFSKWFSESGKLVTKMFQ
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.9
90.9
28.7
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
74.6
0.55
0.9
65.9
40.9
Minor 5ss
40.3
-1.1
3.2
59.2
45.4
Minor BPS
49
-0
2.1
65.99
40.8

Associated Gene:

Gene:
TRIP13
Ensembl Gene ID:
ENSAPLG00000010065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010503
65417371 - 65432801
15431