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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65430937_65432098_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65430937 - 65432098
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTGTTTTATTA
Flanking Amino Acid:
RLSLLLKEISRRSEGLSGRV
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.4
0.73
0.8
77.6
35.5
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
51
0.03
1.6
61.49
40.2

Associated Gene:

Gene:
TRIP13
Ensembl Gene ID:
ENSAPLG00000010065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010503
65417371 - 65432801
15431