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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65432169_65432705_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65432169 - 65432705
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
TCTAACAGAATG
Flanking Amino Acid:
PFLAHALYIQSPSVTMKTFL
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
39.5
-1.2
3
50.5
40
Minor BPS
44
-0.5
1.9
51.25
42.7

Associated Gene:

Gene:
TRIP13
Ensembl Gene ID:
ENSAPLG00000010065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010503
65417371 - 65432801
15431