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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65460142_65462735_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65460142 - 65462735
Intron Length:
2594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AGTTTCTAAATG
Flanking Amino Acid:
EKLAQKGKWRSFLLLLSKKK
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
88
0.85
0.7
81.7
35.4
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
57.6
0.1
1.7
61.81
40.6

Associated Gene:

Gene:
TRANK1
Ensembl Gene ID:
ENSAPLG00000010356
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032043
65444577 - 65493084
48508
ENSAPLT00000021861
65444577 - 65493084
48508
ENSAPLT00000010785
65444577 - 65493084
48508
ENSAPLT00000045226
65444577 - 65491911
47335