Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65460142_65464657_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

65460142 - 65464657

Intron Length:

4516

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTTAATCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

ATTCTCTTAATC

Flanking Amino Acid:

EKLAQKGKWRTFESYGCDGK

Intron Amino Acid Position:

181

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

72.7

44.5

Major BPS

71.2

0.53

70.3

31.9

Major PPT

77.4

0.62

0.9

78.3

33.8

Minor 5ss

37.4

-1.4

42.1

44.4

Minor BPS

0.76

1.1

77.93

30.9

Associated Gene:

Gene:

TRANK1

Ensembl Gene ID:

ENSAPLG00000010356

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047877

65444577 - 65493084

48508