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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_65464797_65465388_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65464797 - 65465388
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTGATTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATTTTCTTGATT
Flanking Amino Acid:
HAVIRLCIKARRNHIFRWLL
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.2
26.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
80.8
0.69
0.9
78.2
39.9
Minor 5ss
42.2
-0.9
2.8
52.8
38.5
Minor BPS
78.5
0.98
1
88.64
29.2

Associated Gene:

Gene:
TRANK1
Ensembl Gene ID:
ENSAPLG00000010356
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032043
65444577 - 65493084
48508
ENSAPLT00000021861
65444577 - 65493084
48508
ENSAPLT00000010785
65444577 - 65493084
48508
ENSAPLT00000047877
65444577 - 65493084
48508
ENSAPLT00000045226
65444577 - 65491911
47335